matlab-based image segmentation Search Results


imsegkmeans  (MathWorks Inc)
90
MathWorks Inc imsegkmeans
Imsegkmeans, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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imsegkmeans - by Bioz Stars, 2026-04
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custom roi-based matlab application  (MathWorks Inc)
90
MathWorks Inc custom roi-based matlab application
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Custom Roi Based Matlab Application, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/custom roi-based matlab application/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
custom roi-based matlab application - by Bioz Stars, 2026-04
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matlab-based image segmentation tool  (MathWorks Inc)
90
MathWorks Inc matlab-based image segmentation tool
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Based Image Segmentation Tool, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based image segmentation tool/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based image segmentation tool - by Bioz Stars, 2026-04
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b-spline image registration tool  (MathWorks Inc)
90
MathWorks Inc b-spline image registration tool
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
B Spline Image Registration Tool, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/b-spline image registration tool/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
b-spline image registration tool - by Bioz Stars, 2026-04
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get_totals matlab function  (MathWorks Inc)
90
MathWorks Inc get_totals matlab function
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Get Totals Matlab Function, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/get_totals matlab function/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
get_totals matlab function - by Bioz Stars, 2026-04
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matlab-based image segmentation  (MathWorks Inc)
90
MathWorks Inc matlab-based image segmentation
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Based Image Segmentation, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based image segmentation/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based image segmentation - by Bioz Stars, 2026-04
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matlab-based image segmenter toolbox  (MathWorks Inc)
90
MathWorks Inc matlab-based image segmenter toolbox
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Based Image Segmenter Toolbox, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based image segmenter toolbox/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based image segmenter toolbox - by Bioz Stars, 2026-04
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matlab-based cell segmentation  (MathWorks Inc)
90
MathWorks Inc matlab-based cell segmentation
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Based Cell Segmentation, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based cell segmentation/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based cell segmentation - by Bioz Stars, 2026-04
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matlab-based image segmentation algorithm fluo_traces_v2.m  (MathWorks Inc)
90
MathWorks Inc matlab-based image segmentation algorithm fluo_traces_v2.m
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Based Image Segmentation Algorithm Fluo Traces V2.M, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab-based image segmentation algorithm fluo_traces_v2.m/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab-based image segmentation algorithm fluo_traces_v2.m - by Bioz Stars, 2026-04
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image segmenter app  (MathWorks Inc)
90
MathWorks Inc image segmenter app
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Image Segmenter App, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/image segmenter app/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
image segmenter app - by Bioz Stars, 2026-04
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matlab version 13  (MathWorks Inc)
90
MathWorks Inc matlab version 13
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Matlab Version 13, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/matlab version 13/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
matlab version 13 - by Bioz Stars, 2026-04
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microscopy image browser software  (MathWorks Inc)
90
MathWorks Inc microscopy image browser software
Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our <t>MATLAB</t> script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.
Microscopy Image Browser Software, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/microscopy image browser software/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
microscopy image browser software - by Bioz Stars, 2026-04
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Image Search Results


Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our MATLAB script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.

Journal: bioRxiv

Article Title: Protein-lipid interactions drive presynaptic assembly upstream of cell adhesion molecules

doi: 10.1101/2023.11.17.567618

Figure Lengend Snippet: Supp 1A. Representative images of ROIs identified for DA9 neuron-specific CLA-1::GFP puncta in CTRL and nrx-1(-) strains. In each genotype, the top image is a representative linescan of CLA-1::GFP at presynapses, and the bottom image contains the ROIs (outlined in green) that were identified by our MATLAB script. The same thresholding and restriction parameters were applied to all images containing this marker. Scale, 5 μm. Supp 1B. Representative images of ROIs identified for an endogenous NRX-1::Skylan marker in a CTRL and syd-1(-) strain. The top image is a representative linescan of NRX-1::Skylan at synapses in the dorsal nerve cord, and the bottom image contains ROIs (outlined in green). The same thresholding and restriction parameters were applied to all images of the NRX-1::Skylan marker. Scale, 2.5 μm.

Article Snippet: Fluorescent puncta in the 32-bit linescan tifs were detected and segmented using a custom ROI-based MATLAB application (Image Processing Toolbox Release 2022a, The MathWorks, Inc.) that uses local means thresholding and ROI watershed segmentation followed by parametric restriction to remove noise pixels.

Techniques: Marker